nagomi
Forensic-grade PubMed research engine for Claude Code. Search 36M+ biomedical articles with PICO-structured queries, synthesize evidence wit
Open source Repository Open in the app JSON README (API)
About
Forensic-grade PubMed research engine for Claude Code. Search 36M+ biomedical articles with PICO-structured queries, synthesize evidence with GRADE confidence ratings, critically appraise article trustworthiness using Oxford CEBM hierarchy, verify citation accuracy against PubMed records, and export references in APA/Vancouver/BibTeX. Includes a research-assistant agent for comprehensive literature reviews. No API key required — queries PubMed E-utilities directly.
Details
- Kind
- Plugins
- Topic
- Government & public data
- Publisher
- avivlyweb
- Origin
- marketplace
- Category
- ferramentas
- Last push
- 2026-02-27T22:11:18Z
- Repository state
- ativo
- Language
- Python
- License
- MIT
- Added
- 2026-08-30 01:48:58
- Updated
- 2026-08-30 01:48:58
- Origin id
avivlyweb/nagomi-pubmed-plugin/nagomi
README
<p align="center"> <img src="docs/images/banner.svg" alt="Nagomi PubMed Research" width="100%"/> </p> <h1 align="center">Nagomi PubMed Research</h1> <p align="center"> <em>Forensic-grade PubMed research engine for Claude Code</em> </p> <p align="center"> <img src="https://img.shields.io/badge/claude--code-plugin-8B5CF6?style=flat-square" alt="Claude Code Plugin"/> <img src="https://img.shields.io/badge/PubMed-MCP-D4A574?style=flat-square" alt="PubMed MCP"/> <img src="https://img.shields.io/badge/license-MIT-3D3D3D?style=flat-square" alt="MIT License"/> </p> --- ## What it does Five research tools accessible as slash commands in Claude Code: | Command | Description | |---------|-------------| | `/nagomi:search` | Search PubMed with PICO-structured queries | | `/nagomi:synthesis` | PhD-level evidence synthesis across studies | | `/nagomi:analyze` | Critical appraisal of article trustworthiness | | `/nagomi:verify` | Verify citations against PubMed records | | `/nagomi:export` | Export references in APA, Vancouver, or BibTeX | Plus a **research-assistant** agent for comprehensive literature reviews combining all tools. ## Install ```bash claude plugin install avivlyweb/nagomi-pubmed-plugin ``` Or test locally: ```bash claude --plugin-dir /path/to/nagomi-pubmed-plugin ``` Dependencies (Python 3.9+) are installed automatically on first use. ## Usage ``` /nagomi:search CRISPR gene therapy sickle cell /nagomi:synthesis long COVID cognitive outcomes /nagomi:analyze 38547891 /nagomi:verify 10.1001/jama.2023.12345 /nagomi:export yoga neuroplasticity --format apa ``` ## How it works The plugin bundles a Python MCP server that queries PubMed E-utilities (NCBI) directly. No API key required. The server provides: - **Enhanced search** with study design classification and evidence leveling - **Trustworthiness analysis** using Oxford CEBM hierarchy and risk-of-bias assessment - **Research synthesis** with GRADE-style confidence ratings - **Reference verification** via fuzzy matching against PubMed records - **Citation export** in standard academic formats ## License MIT