nagomi
Nagomi Clinical Forensic: PhD-level medical research engine with automated hallucination detection, volume paradox logic, and evidence gradi
Open source Open in the app JSON README (API)
About
Nagomi Clinical Forensic: PhD-level medical research engine with automated hallucination detection, volume paradox logic, and evidence grading.
Details
- Kind
- Plugins
- Topic
- Government & public data
- Publisher
- avivlyweb
- Origin
- gemini
- Category
- ferramentas
- Version
- 3.1.0
- Stars
- 3
- Last push
- 2026-03-22T10:17:02Z
- Repository state
- ativo
- Language
- Python
- License
- MIT
- Added
- 2026-08-30 14:13:39
- Updated
- 2026-08-30 14:13:39
- Origin id
avivlyweb/pubmed-gemini-extension
README
<div align="center">  **Forensic-grade clinical research engine for Gemini CLI** [](https://gcli.dev) [](https://pubmed.ncbi.nlm.nih.gov) [](https://github.com/avivlyweb/pubmed-gemini-extension/releases) [](#license) </div> --- # 🌸 Nagomi (和み): Calm Clarity in a Crisis of Fraud Nagomi is not just a search tool. It is a **forensic-grade clinical research engine** designed to protect the integrity of medical science. In a world where **1 in 500 academic papers are retracted** and AI hallucinations create "fake evidence" that looks 100% real, Nagomi acts as your scientific gatekeeper. It uses mathematical logic and deep-database cross-referencing to separate ground-breaking research from AI-generated fabrications. --- ## 🎬 See It In Action <div align="center">  </div> --- ## 🚀 Why Nagomi? (The Power of Forensic Research) ### ⚡ 1 Year of Research in 45 Seconds * **The Scenario:** A student spent a full year manually researching diagnostic clusters for shoulder impingement. * **The Nagomi Result:** In **45 seconds**, Nagomi performed a PICO-optimized search, audited the methodology of 20+ articles, and generated a more accurate, 2025-aligned clinical algorithm. * **Impact:** Massive ROI for clinicians and students who need "Gold Standard" answers without the manual labor. ### 🕵️♂️ Catching "Uncatchable" AI Hallucinations Nagomi automates scientific logic checks that standard plagiarism tools miss. * **The Case:** Detected a **Sequential ID Mismatch** in a student paper. * **The Proof:** Proved a cited "2025 AI Study" was actually using an ID from a **2020 paper about bladder infections**. * **Impact:** Absolute protection for academic integrity and degree quality control. --- ## 🛠️ The Clinical Research Suite | Command | Capability | The Nagomi "Superpower" | |:--|:--|:--| | **`/nagomi:search`** | **PICO-Optimized Search** | Doesn't just find keywords. It extracts **Population, Intervention, Comparison, and Outcome** to find the exact clinical "DNA" of your question. | | **`/nagomi:synthesis`**| **PhD-Level Collation** | Collates dozens of studies into a weighted **Evidence Compass**. It tells you not just *what* was found, but *how much you should trust it*. | | **`/nagomi:verify`** | **Hallucination Hunter** | Scans PDFs/DOIs for **Volume Paradoxes** and **Stolen IDs**. Catch fabrication before it enters your bibliography. | | **`/nagomi:analyze`** | **Methodological Audit** | Performs a deep-dive on a single PMID. Grades it **A to D** based on sample size, study design, and risk of bias. | | **`/nagomi:export`** | **Seamless Integration** | Instant export to **BibTeX or RIS**. Connects your research directly to Zotero, Mendeley, or LaTeX. | --- ## 🧠 The ABC-TOM v3.1 Intelligence Layers Nagomi doesn't just "search"—it **thinks** like a forensic auditor: 1. **PICO Translation:** Automatically converts casual questions (e.g., "best gout meds") into precise clinical search strings. 2. **Evidence Compass:** A visual weighted verdict that correctly favors Grade A Systematic Reviews over anecdotal Case Reports. 3. **Volume Paradox Logic:** Identifies "Frankenstein" citations where the volume number is mathematically impossible for the cited year. 4. **Sequential ID Tracking:** Detects when an AI reuses real article IDs from old papers to mask fake new titles. 5. **Retraction Monitor:** Alerts you if a paper in your list has been officially pulled for fraud since its publication. --- ## Usage Examples **For Clinicians: Find the "Best" Treatment** ```bash /nagomi:search what is the most effective treatment for Achilles tendinopathy /nagomi:synthesis yoga vs meditation for neuroplasticity in seniors ``` **For Professors: Audit Academic Integrity** ```bash /nagomi:verify ~/Downloads/final_submission.pdf /nagomi:verify 10.1016/j.mcna.2014.03.005 ``` **For Researchers: Deep-Dive and Export** ```bash /nagomi:analyze 34580864 /nagomi:export "chronic heart failure telemonitoring" format=bibtex ``` --- ## Installation ```bash gemini extensions install https://github.com/avivlyweb/pubmed-gemini-extension ``` **Requirements:** Gemini CLI, Node.js 18+, Python 3.9+ --- ## Version History | Version | Milestone | Features | |---------|-----------|----------| | **3.1.0** | **The Forensic Update** | Volume Paradox, Sequential IDs, Renamed to Nagomi. | | **3.0.0** | **The ABC-TOM Update** | 6-Tier Classification, Grey Literature detection. | | **2.5.0** | **The Evidence Update** | Evidence Compass, PICO logic, Weighted Verdicts. | --- ## License MIT --- > [!IMPORTANT] > Nagomi Clinical Forensic is a research tool for scholarly exploration. It does not constitute medical advice. Clinical decisions should always be mediated by qualified practitioners. <div align="center"> <img src="https://physiotherapy.ai/wp-content/uploads/2025/08/Logo-icon-pt-charlie.png" width="32" alt="PT Charlie"/> <sub>Made with love by Aviv at <a href="https://physiotherapy.ai">avivly</a></sub> </div>