{
  "markdown": "# papersflow-mcp\n\n`papersflow-mcp` is PapersFlow's production / GA hosted MCP server for literature search, citation verification, related-paper discovery, and authenticated research workflows across Claude, Codex, Gemini, ChatGPT-style MCP apps, and other MCP clients.\n\n<a href=\"https://glama.ai/mcp/servers/papersflow-ai/papers-flow\">\n  <img width=\"380\" height=\"200\" src=\"https://glama.ai/mcp/servers/papersflow-ai/papers-flow/badge\" alt=\"PapersFlow MCP server\" />\n</a>\n\n## Production Endpoint\n\n- MCP URL: `https://doxa.papersflow.ai/mcp`\n- OAuth protected resource metadata: `https://doxa.papersflow.ai/.well-known/oauth-protected-resource`\n- OAuth authorization server metadata: `https://doxa.papersflow.ai/.well-known/oauth-authorization-server`\n- Dynamic client registration: `https://doxa.papersflow.ai/oauth/register`\n\n## Public Tool Surface\n\n- `search`\n- `fetch`\n- `verify_citation`\n- `search_literature`\n- `find_related_papers`\n- `get_citation_graph`\n- `get_paper_neighbors`\n- `expand_citation_graph`\n\nAuthenticated and paid tools are available through PapersFlow account access and plan entitlements.\n\n## Documentation\n\n- [Setup tutorial](./docs/TUTORIAL.md)\n- [MCP release guide](./docs/README.md)\n\n## Gemini CLI Extension\n\nThis repository also includes a root `gemini-extension.json` so Gemini CLI can install it as an extension wrapper around the hosted MCP server.\n\nOfficial Gemini CLI flow supported by the docs:\n\n```bash\ngemini extensions install https://github.com/papersflow-ai/papersflow-mcp\n```\n\nThe extension manifest lives at the repository root and points Gemini CLI at the hosted MCP endpoint using Gemini's remote MCP config shape.\n\nIf Gemini shows:\n\n```text\npapersflow-mcp (from papersflow-mcp) - Disconnected (OAuth not authenticated)\n```\n\nthat is expected until OAuth is completed inside Gemini:\n\n```text\n/mcp auth papersflow-mcp\n/mcp refresh\n/mcp list\n```\n\n`gemini extensions install` installs the extension package. It does not complete OAuth during install. The browser opens when Gemini starts the remote MCP auth flow, typically via `/mcp auth papersflow-mcp` or the first auth-required connection attempt.\n\nGemini CLI references:\n\n- `https://geminicli.com/docs/extensions/releasing/`\n- `https://geminicli.com/docs/extensions/reference/`\n- `https://geminicli.com/docs/extensions/writing-extensions/`\n\n## Client Setup\n\n### Cline (VS Code)\n\nAdd PapersFlow as a remote MCP server in your Cline MCP settings:\n\n```json\n{\n  \"mcpServers\": {\n    \"papersflow\": {\n      \"url\": \"https://doxa.papersflow.ai/mcp\",\n      \"transportType\": \"streamable-http\"\n    }\n  }\n}\n```\n\nOn first use, Cline will open a browser window for OAuth sign-in to your PapersFlow account. Public tools (literature search, citations, paper discovery) work immediately; authenticated tools require a PapersFlow plan.\n\n### Other Clients\n\nSupported client paths today:\n\n- Codex\n- Claude Code\n- Gemini CLI\n- ChatGPT-style hosted MCP apps\n\nThe setup guide includes both command-style and config-style snippets where supported.\n\n## Support And Policies\n\n- Website: `https://papersflow.ai`\n- Privacy: `https://papersflow.ai/privacy`\n- Terms: `https://papersflow.ai/terms`\n- Support: `https://papersflow.ai/contact`\n- Support email: `developer@papersflow.ai`\n\n## Notes\n\n- This repository is the public documentation and submission surface for the hosted MCP service.\n- The production service is operated by PapersFlow and backed by the main PapersFlow platform.",
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