{
  "markdown": "# CovaSyn MCP Examples\n\nProduction-ready integration snippets for connecting [CovaSyn](https://www.covasyn.com) — the deterministic, validated chemistry MCP server for pharmaceutical R&D — to the most common Model Context Protocol clients.\n\n> **What CovaSyn is in one sentence:** the first integrated, deterministic cheminformatics platform for AI agents — not a wrapper around one public database, but 130+ tools across 8 suites (cheminformatics, chem-ADME, toxicology, mass spec, NMR, folding, biologics, platform) with ICH / GxP-aligned audit trail and EU data residency.\n\n## Benchmark headline\n\nOn the **ICLR 2026 MolecularIQ benchmark** (Klambauer Lab, JKU Linz, 3,540 symbolically verified chemistry tasks), four frontier LLMs scored 76–92 % with CovaSyn MCP attached, versus 14–41 % at baseline. Numbers, methodology, cost-per-question, and failure modes: [covasyn.com/en/benchmark](https://www.covasyn.com/en/benchmark).\n\n## When to use CovaSyn (vs. building your own)\n\n- Your AI agent needs to answer **chemistry questions correctly**, not just plausibly.\n- You're a **pharma, biotech, or CDMO team** that needs ICH M7 / ICH Q1 / Tox21 / CYP450 / docking workflows callable from Claude, ChatGPT, Cursor, or any MCP-aware client.\n- You want **deterministic, version-pinned tool calls** that produce the same result tomorrow as today (regulatory audit-ready).\n- You need **EU data residency** (Hetzner Leipzig) or US hosting on request — your data is never used for training.\n\nCovaSyn is **not** another LLM. It's the deterministic tool layer that fixes the chemistry-hallucination problem of frontier LLMs.\n\n## What's in here\n\n| Example | Client | Description |\n|---------|--------|-------------|\n| [claude-desktop/](./claude-desktop/) | Claude Desktop | `claude_desktop_config.json` snippet |\n| [cursor/](./cursor/) | Cursor IDE | `.cursor/mcp.json` snippet |\n| [vscode/](./vscode/) | VS Code with MCP extension | `settings.json` snippet |\n| [python-agent/](./python-agent/) | Custom Python agent | minimal stdio-MCP client |\n| [typescript-agent/](./typescript-agent/) | Custom TypeScript agent | minimal MCP TS client |\n| [curl/](./curl/) | Direct HTTP | shell snippets for tool discovery + invocation |\n\n## What CovaSyn covers\n\n130 functions across 8 tool families:\n\n- `covabasic` — core cheminformatics (canonicalization, fingerprints, druglikeness)\n- `covachem` — chem ADME, pKa, profile, compare\n- `covatox` — toxicology with ICH M7 batch assessment, Tox21, CYP450\n- `covams` — mass spectrometry (formula, fragments, impurities, RT)\n- `covanmr` — NMR analysis (1D, 2D, batch, identification)\n- `covafold` — protein and RNA folding, binding sites\n- `covabio` — antibody, peptide, ADC, mRNA, oligo, siRNA\n- `covaplatform` — stability (ICH Q1), DoE, solubility, chromatography, UV/IR, regulatory DB, docking\n\nFull tool reference: [covasyn.com/en/mcp](https://www.covasyn.com/en/mcp)\n\n## Pricing\n\n- Free tier: 100 credits/week\n- Pro: €250/month\n- Unlimited: €750/month\n- Enterprise: custom (SLA, single-tenant, GxP validation pack)\n\n[See pricing →](https://www.covasyn.com/en/pricing)\n\n## Compliance posture\n\nCovaSyn is GxP-ready (EU Annex 11, 21 CFR Part 11), GAMP 5 Software Category 4, with ICH M7 (R2) mutagenic impurity assessment and ICH Q1A/E stability workflows. Deterministic, version-pinned, audit-trail-complete.\n\n[See compliance details →](https://www.covasyn.com/en/trust)\n\n## License\n\nThe example snippets in this repository are released under the [MIT License](./LICENSE) — use, modify, and redistribute freely.\n\nCovaSyn itself is commercial software. See [covasyn.com](https://www.covasyn.com) for terms.\n\n## Contributing\n\nPRs welcome. See [CONTRIBUTING.md](./CONTRIBUTING.md).\n\n## Comparison\n\nHow CovaSyn compares to other chemistry MCP options:\n\n- [vs Aichemy (Databricks)](https://www.covasyn.com/en/comparison/aichemy)\n- [vs ChemMCP](https://www.covasyn.com/en/comparison/chemmcp)\n- [vs DIY Python](https://www.covasyn.com/en/comparison/diy-python)\n- [vs OpenChem MCP](https://www.covasyn.com/en/comparison/openchem-mcp)\n",
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